PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 204aa    MW: 22321.3 Da    PI: 8.5768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031061genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000117396123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 ykC +C k Fs    L+ H  + H
  Lus10031061 73 YKCDKCLKKFSFYQALVAHRASqH 96
                 9******************99888 PP

2zf-C2H211.50.00095137160123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++Cp C+++F++   L  H r+ H
  Lus10031061 137 FTCPSCSEVFRSGVALGGHKRVvH 160
                  89**********999999999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.83E-57295No hitNo description
PfamPF139121.4E-57298IPR007087Zinc finger, C2H2
PROSITE profilePS501579.99373101IPR007087Zinc finger, C2H2
SMARTSM003550.27396IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807596IPR007087Zinc finger, C2H2
SuperFamilySSF576677.83E-5132157No hitNo description
PfamPF139125.2E-9136160IPR007087Zinc finger, C2H2
SMARTSM003550.46137160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138137165IPR007087Zinc finger, C2H2
PROSITE patternPS000280139160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRSKKQCPEI SSTPSTPTTT MLNNDGNVIL CLVVNVSQDC PEDKGKELVE PAEKAEKKKD  60
EGESSRPIRK GRYKCDKCLK KFSFYQALVA HRASQHKKKD KDQVEIDDAG GGERHVMKKG  120
CRGSGGAQAT QKKKRVFTCP SCSEVFRSGV ALGGHKRVVH SSTPVVTEPI TVVGEEQEKI  180
TSSRRIAIDL NLPPPIDDDD VDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-11C2H2-like zinc finger protein